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Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography

Authors: Hiroki Yamaguchi,Kazutoshi Takahashi,Nobutaka Numoto,Hiroshi Suzuki,Moemi Tatsumi,Akiko Kamegawa,Kouki Nishikawa,Yasuhisa Asano,Toshimi Mizukoshi,Hiroshi Miyano,Yoshinori Fujiyoshi,Masayuki Sugiki
Publisher: Oxford University Press (OUP)
Publish date: 2024-10-18
ISSN: 0021-924X,1756-2651 DOI: 10.1093/jb/mvae070
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While the study provides significant structural insights, there are some gaps in the exploration of functional dynamics. For example, the kinetic assays focus on steady-state parameters (e.g., k_cat/K_m​) but do not address how conformational changes in the ATEYS loop dynamically regulate substrate access. Could the authors discuss whether time-resolved methods like stopped-flow spectroscopy or molecular dynamics simulations were considered to link structural flexibility with enzymatic kinetics? Additionally, the study demonstrates enhanced reactivity of the E493A mutant toward non-native substrates, yet it stops short of exploring its structural basis. Were cryo-EM or crystallographic data obtained for this mutant to confirm whether the altered activity corresponds to conformational changes?

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